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2015


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Enzymatically active biomimetic micropropellers for the penetration of mucin gels

Walker (Schamel), D., Käsdorf, B. T., Jeong, H. H., Lieleg, O., Fischer, P.

Science Advances, 1(11):e1500501, December 2015 (article)

Abstract
In the body, mucus provides an important defense mechanism by limiting the penetration of pathogens. It is therefore also a major obstacle for the efficient delivery of particle-based drug carriers. The acidic stomach lining in particular is difficult to overcome because mucin glycoproteins form viscoelastic gels under acidic conditions. The bacterium Helicobacter pylori has developed a strategy to overcome the mucus barrier by producing the enzyme urease, which locally raises the pH and consequently liquefies the mucus. This allows the bacteria to swim through mucus and to reach the epithelial surface. We present an artificial system of reactive magnetic micropropellers that mimic this strategy to move through gastric mucin gels by making use of surface-immobilized urease. The results demonstrate the validity of this biomimetic approach to penetrate biological gels, and show that externally propelled microstructures can actively and reversibly manipulate the physical state of their surroundings, suggesting that such particles could potentially penetrate native mucus.

pf

link (url) DOI [BibTex]

2015


link (url) DOI [BibTex]


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Distributed Event-based State Estimation

Trimpe, S.

Max Planck Institute for Intelligent Systems, November 2015 (techreport)

Abstract
An event-based state estimation approach for reducing communication in a networked control system is proposed. Multiple distributed sensor-actuator-agents observe a dynamic process and sporadically exchange their measurements and inputs over a bus network. Based on these data, each agent estimates the full state of the dynamic system, which may exhibit arbitrary inter-agent couplings. Local event-based protocols ensure that data is transmitted only when necessary to meet a desired estimation accuracy. This event-based scheme is shown to mimic a centralized Luenberger observer design up to guaranteed bounds, and stability is proven in the sense of bounded estimation errors for bounded disturbances. The stability result extends to the distributed control system that results when the local state estimates are used for distributed feedback control. Simulation results highlight the benefit of the event-based approach over classical periodic ones in reducing communication requirements.

am ics

arXiv [BibTex]

arXiv [BibTex]


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Learning Torque Control in Presence of Contacts using Tactile Sensing from Robot Skin

Calandra, R., Ivaldi, S., Deisenroth, M., Peters, J.

In 15th IEEE-RAS International Conference on Humanoid Robots, pages: 690-695, Humanoids, November 2015 (inproceedings)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Evaluation of Interactive Object Recognition with Tactile Sensing

Hoelscher, J., Peters, J., Hermans, T.

In 15th IEEE-RAS International Conference on Humanoid Robots, pages: 310-317, Humanoids, November 2015 (inproceedings)

am ei

DOI [BibTex]

DOI [BibTex]


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Optimizing Robot Striking Movement Primitives with Iterative Learning Control

Koc, O., Maeda, G., Neumann, G., Peters, J.

In 15th IEEE-RAS International Conference on Humanoid Robots, pages: 80-87, Humanoids, November 2015 (inproceedings)

am ei

DOI [BibTex]

DOI [BibTex]


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easyGWAS: An Integrated Computational Framework for Advanced Genome-Wide Association Studies

Grimm, Dominik

Eberhard Karls Universität Tübingen, November 2015 (phdthesis)

ei

[BibTex]

[BibTex]


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A Comparison of Contact Distribution Representations for Learning to Predict Object Interactions

Leischnig, S., Luettgen, S., Kroemer, O., Peters, J.

In 15th IEEE-RAS International Conference on Humanoid Robots, pages: 616-622, Humanoids, November 2015 (inproceedings)

am ei

DOI [BibTex]

DOI [BibTex]


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Quantifying changes in climate variability and extremes: Pitfalls and their overcoming

Sippel, S., Zscheischler, J., Heimann, M., Otto, F. E. L., Peters, J., Mahecha, M. D.

Geophysical Research Letters, 42(22):9990-9998, November 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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First-Person Tele-Operation of a Humanoid Robot

Fritsche, L., Unverzagt, F., Peters, J., Calandra, R.

In 15th IEEE-RAS International Conference on Humanoid Robots, pages: 997-1002, Humanoids, November 2015 (inproceedings)

am ei

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Probabilistic Segmentation Applied to an Assembly Task

Lioutikov, R., Neumann, G., Maeda, G., Peters, J.

In 15th IEEE-RAS International Conference on Humanoid Robots, pages: 533-540, Humanoids, November 2015 (inproceedings)

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DOI [BibTex]

DOI [BibTex]


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Diversity of sharp wave-ripple LFP signatures reveals differentiated brain-wide dynamical events

Ramirez-Villegas, J. F., Logothetis, N. K., Besserve, M.

Proceedings of the National Academy of Sciences U.S.A, 112(46):E6379-E6387, November 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Causal Discovery Beyond Conditional Independences

Sgouritsa, E.

Eberhard Karls Universität Tübingen, Germany, October 2015 (phdthesis)

ei

link (url) [BibTex]

link (url) [BibTex]


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Automatic LQR Tuning Based on Gaussian Process Optimization: Early Experimental Results

Marco, A., Hennig, P., Bohg, J., Schaal, S., Trimpe, S.

Machine Learning in Planning and Control of Robot Motion Workshop at the IEEE/RSJ International Conference on Intelligent Robots and Systems (iROS), pages: , , Machine Learning in Planning and Control of Robot Motion Workshop, October 2015 (conference)

Abstract
This paper proposes an automatic controller tuning framework based on linear optimal control combined with Bayesian optimization. With this framework, an initial set of controller gains is automatically improved according to a pre-defined performance objective evaluated from experimental data. The underlying Bayesian optimization algorithm is Entropy Search, which represents the latent objective as a Gaussian process and constructs an explicit belief over the location of the objective minimum. This is used to maximize the information gain from each experimental evaluation. Thus, this framework shall yield improved controllers with fewer evaluations compared to alternative approaches. A seven-degree-of-freedom robot arm balancing an inverted pole is used as the experimental demonstrator. Preliminary results of a low-dimensional tuning problem highlight the method’s potential for automatic controller tuning on robotic platforms.

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PDF DOI Project Page [BibTex]

PDF DOI Project Page [BibTex]


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Diversity of sharp wave-ripples in the CA1 of the macaque hippocampus and their brain wide signatures

Ramirez-Villegas, J. F., Logothetis, N. K., Besserve, M.

45th Annual Meeting of the Society for Neuroscience (Neuroscience 2015), October 2015 (poster)

ei

link (url) [BibTex]

link (url) [BibTex]


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Gaussian Process Optimization for Self-Tuning Control

Marco, A.

Polytechnic University of Catalonia (BarcelonaTech), October 2015 (mastersthesis)

am ics

PDF Project Page [BibTex]

PDF Project Page [BibTex]


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Noise masking of White’s illusion exposes the weakness of current spatial filtering models of lightness perception

Betz, T., Shapley, R. M., Wichmann, F. A., Maertens, M.

Journal of Vision, 15(14):1-17, October 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Permutational Rademacher Complexity: a New Complexity Measure for Transductive Learning

Tolstikhin, I., Zhivotovskiy, N., Blanchard, G.

In Proceedings of the 26th International Conference on Algorithmic Learning Theory, 9355, pages: 209-223, Lecture Notes in Computer Science, (Editors: K. Chaudhuri, C. Gentile and S. Zilles), Springer, ALT, October 2015 (inproceedings)

ei

DOI [BibTex]

DOI [BibTex]


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Causal Inference for Empirical Time Series Based on the Postulate of Independence of Cause and Mechanism

Besserve, M.

53rd Annual Allerton Conference on Communication, Control, and Computing, September 2015 (talk)

ei

[BibTex]

[BibTex]


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From Points to Probability Measures: A Statistical Learning on Distributions with Kernel Mean Embedding

Muandet, K.

University of Tübingen, Germany, University of Tübingen, Germany, September 2015 (phdthesis)

ei

[BibTex]

[BibTex]


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Machine Learning Approaches to Image Deconvolution

Schuler, C.

University of Tübingen, Germany, University of Tübingen, Germany, September 2015 (phdthesis)

ei

[BibTex]

[BibTex]


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Stabilizing Novel Objects by Learning to Predict Tactile Slip

Veiga, F., van Hoof, H., Peters, J., Hermans, T.

In Proceedings of the IEEE/RSJ Conference on Intelligent Robots and Systems, pages: 5065-5072, IROS, September 2015 (inproceedings)

am ei

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Shifts of Gamma Phase across Primary Visual Cortical Sites Reflect Dynamic Stimulus-Modulated Information Transfer

Besserve, M., Lowe, S. C., Logothetis, N. K., Schölkopf, B., Panzeri, S.

PLOS Biology, 13(9):e1002257, September 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Model-Free Probabilistic Movement Primitives for Physical Interaction

Paraschos, A., Rueckert, E., Peters, J., Neumann, G.

In Proceedings of the IEEE/RSJ Conference on Intelligent Robots and Systems, pages: 2860-2866, IROS, September 2015 (inproceedings)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Combined Pose-Wrench and State Machine Representation for Modeling Robotic Assembly Skills

Wahrburg, A., Zeiss, S., Matthias, B., Peters, J., Ding, H.

In Proceedings of the IEEE/RSJ Conference on Intelligent Robots and Systems, pages: 852-857, IROS, September 2015 (inproceedings)

am ei

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Probabilistic Progress Prediction and Sequencing of Concurrent Movement Primitives

Manschitz, S., Kober, J., Gienger, M., Peters, J.

In Proceedings of the IEEE/RSJ Conference on Intelligent Robots and Systems, pages: 449-455, IROS, September 2015 (inproceedings)

am ei

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Reinforcement Learning vs Human Programming in Tetherball Robot Games

Parisi, S., Abdulsamad, H., Paraschos, A., Daniel, C., Peters, J.

In Proceedings of the IEEE/RSJ Conference on Intelligent Robots and Systems, pages: 6428-6434, IROS, September 2015 (inproceedings)

am ei

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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The EChemPen: A Guiding Hand To Learn Electrochemical Surface Modifications

Valetaud, M., Loget, G., Roche, J., Hueken, N., Fattah, Z., Badets, V., Fontaine, O., Zigah, D.

J. of Chem. Ed., 92(10):1700-1704, September 2015 (article)

Abstract
The Electrochemical Pen (EChemPen) was developed as an attractive tool for learning electrochemistry. The fabrication, principle, and operation of the EChemPen are simple and can be easily performed by students in practical classes. It is based on a regular fountain pen principle, where the electrolytic solution is dispensed at a tip to locally modify a conductive surface by triggering a localized electrochemical reaction. Three simple model reactions were chosen to demonstrate the versatility of the EChemPen for teaching various electrochemical processes. We describe first the reversible writing/erasing of metal letters, then the electrodeposition of a black conducting polymer "ink", and finally the colorful writings that can be generated by titanium anodization and that can be controlled by the applied potential. These entertaining and didactic experiments are adapted for teaching undergraduate students that start to study electrochemistry by means of surface modification reactions.

pf

DOI [BibTex]

DOI [BibTex]


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Learning Motor Skills from Partially Observed Movements Executed at Different Speeds

Ewerton, M., Maeda, G., Peters, J., Neumann, G.

In Proceedings of the IEEE/RSJ Conference on Intelligent Robots and Systems, pages: 456-463, IROS, September 2015 (inproceedings)

am ei

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Semi-Supervised Interpolation in an Anticausal Learning Scenario

Janzing, D., Schölkopf, B.

Journal of Machine Learning Research, 16, pages: 1923-1948, September 2015 (article)

ei

link (url) [BibTex]

link (url) [BibTex]


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Adaptive and Learning Concepts in Hydraulic Force Control

Doerr, A.

University of Stuttgart, September 2015 (mastersthesis)

am ics

[BibTex]

[BibTex]


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3D-printed Soft Microrobot for Swimming in Biological Fluids

Qiu, T., Palagi, S., Fischer, P.

In Conf. Proc. IEEE Eng. Med. Biol. Soc., pages: 4922-4925, August 2015 (inproceedings)

Abstract
Microscopic artificial swimmers hold the potential to enable novel non-invasive medical procedures. In order to ease their translation towards real biomedical applications, simpler designs as well as cheaper yet more reliable materials and fabrication processes should be adopted, provided that the functionality of the microrobots can be kept. A simple single-hinge design could already enable microswimming in non-Newtonian fluids, which most bodily fluids are. Here, we address the fabrication of such single-hinge microrobots with a 3D-printed soft material. Firstly, a finite element model is developed to investigate the deformability of the 3D-printed microstructure under typical values of the actuating magnetic fields. Then the microstructures are fabricated by direct 3D-printing of a soft material and their swimming performances are evaluated. The speeds achieved with the 3D-printed microrobots are comparable to those obtained in previous work with complex fabrication procedures, thus showing great promise for 3D-printed microrobots to be operated in biological fluids.

pf

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Is Breathing Rate a Confounding Variable in Brain-Computer Interfaces (BCIs) Based on EEG Spectral Power?

Ibarra Chaoul, A., Grosse-Wentrup, M.

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pages: 1079-1082, EMBC, August 2015 (conference)

ei

DOI [BibTex]

DOI [BibTex]


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Testing the role of luminance edges in White’s illusion with contour adaptation

Betz, T., Shapley, R. M., Wichmann, F. A., Maertens, M.

Journal of Vision, 15(11):1-16, August 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Retrospective motion correction of magnitude-input MR images

Loktyushin, A., Schuler, C., Scheffler, K., Schölkopf, B.

First International Workshop on Machine Learning Meets Medical Imaging (MLMMI 2015), held in conjunction with ICML 2015, 9487, pages: 3-12, Lecture Notes in Computer Science, (Editors: K. K. Bhatia and H. Lombaert), Springer, July 2015 (conference)

ei

DOI [BibTex]

DOI [BibTex]


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Direct Loss Minimization Inverse Optimal Control

Doerr, A., Ratliff, N., Bohg, J., Toussaint, M., Schaal, S.

In Proceedings of Robotics: Science and Systems, Rome, Italy, Robotics: Science and Systems XI, July 2015 (inproceedings)

Abstract
Inverse Optimal Control (IOC) has strongly impacted the systems engineering process, enabling automated planner tuning through straightforward and intuitive demonstration. The most successful and established applications, though, have been in lower dimensional problems such as navigation planning where exact optimal planning or control is feasible. In higher dimensional systems, such as humanoid robots, research has made substantial progress toward generalizing the ideas to model free or locally optimal settings, but these systems are complicated to the point where demonstration itself can be difficult. Typically, real-world applications are restricted to at best noisy or even partial or incomplete demonstrations that prove cumbersome in existing frameworks. This work derives a very flexible method of IOC based on a form of Structured Prediction known as Direct Loss Minimization. The resulting algorithm is essentially Policy Search on a reward function that rewards similarity to demonstrated behavior (using Covariance Matrix Adaptation (CMA) in our experiments). Our framework blurs the distinction between IOC, other forms of Imitation Learning, and Reinforcement Learning, enabling us to derive simple, versatile, and practical algorithms that blend imitation and reinforcement signals into a unified framework. Our experiments analyze various aspects of its performance and demonstrate its efficacy on conveying preferences for motion shaping and combined reach and grasp quality optimization.

am ics

PDF Video Project Page [BibTex]

PDF Video Project Page [BibTex]


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LMI-Based Synthesis for Distributed Event-Based State Estimation

Muehlebach, M., Trimpe, S.

In Proceedings of the American Control Conference, July 2015 (inproceedings)

Abstract
This paper presents an LMI-based synthesis procedure for distributed event-based state estimation. Multiple agents observe and control a dynamic process by sporadically exchanging data over a broadcast network according to an event-based protocol. In previous work [1], the synthesis of event-based state estimators is based on a centralized design. In that case three different types of communication are required: event-based communication of measurements, periodic reset of all estimates to their joint average, and communication of inputs. The proposed synthesis problem eliminates the communication of inputs as well as the periodic resets (under favorable circumstances) by accounting explicitly for the distributed structure of the control system.

am ics

PDF DOI Project Page [BibTex]

PDF DOI Project Page [BibTex]


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Kernel methods in medical imaging

Charpiat, G., Hofmann, M., Schölkopf, B.

In Handbook of Biomedical Imaging, pages: 63-81, 4, (Editors: Paragios, N., Duncan, J. and Ayache, N.), Springer, Berlin, Germany, June 2015 (inbook)

ei

Web link (url) [BibTex]

Web link (url) [BibTex]


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Guaranteed H2 Performance in Distributed Event-Based State Estimation

Muehlebach, M., Trimpe, S.

In Proceeding of the First International Conference on Event-based Control, Communication, and Signal Processing, June 2015 (inproceedings)

am ics

PDF DOI Project Page [BibTex]

PDF DOI Project Page [BibTex]


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On the Choice of the Event Trigger in Event-based Estimation

Trimpe, S., Campi, M.

In Proceeding of the First International Conference on Event-based Control, Communication, and Signal Processing, June 2015 (inproceedings)

am ics

PDF DOI Project Page [BibTex]

PDF DOI Project Page [BibTex]


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Retrospective rigid motion correction of undersampled MRI data

Loktyushin, A., Babayeva, M., Gallichan, D., Krueger, G., Scheffler, K., Kober, T.

23rd Annual Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine, ISMRM, June 2015 (poster)

ei

[BibTex]

[BibTex]


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Improving Quantitative Susceptibility and R2* Mapping by Applying Retrospective Motion Correction

Feng, X., Loktyushin, A., Deistung, A., Reichenbach, J. R.

23rd Annual Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine, ISMRM, June 2015 (poster)

ei

[BibTex]

[BibTex]


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Optimal Length of Low Reynolds Number Nanopropellers

Walker (Schamel), D., Kuebler, M., Morozov, K. I., Fischer, P., Leshansky, A. M.

Nano Letters, 15(7):4412-4416, June 2015 (article)

Abstract
Locomotion in fluids at the nanoscale is dominated by viscous drag. One efficient propulsion scheme is to use a weak rotating magnetic field that drives a chiral object. Froth bacterial flagella to artificial drills, the corkscrew is a universally useful chiral shape for propulsion in viscous environments. Externally powered magnetic micro- and nanomotors have been recently developed that allow for precise fuel-free propulsion in complex media. Here, we combine analytical and numerical theory with experiments on nanostructured screw-propellers to show that the optimal length is surprisingly short only about one helical turn, which is shorter than most of the structures in use to date. The results have important implications for the design of artificial actuated nano- and micropropellers and can dramatically reduce fabrication times, while ensuring optimal performance.

pf

DOI [BibTex]

DOI [BibTex]


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Permutohedral Lattice CNNs

Kiefel, M., Jampani, V., Gehler, P. V.

In ICLR Workshop Track, ICLR, May 2015 (inproceedings)

Abstract
This paper presents a convolutional layer that is able to process sparse input features. As an example, for image recognition problems this allows an efficient filtering of signals that do not lie on a dense grid (like pixel position), but of more general features (such as color values). The presented algorithm makes use of the permutohedral lattice data structure. The permutohedral lattice was introduced to efficiently implement a bilateral filter, a commonly used image processing operation. Its use allows for a generalization of the convolution type found in current (spatial) convolutional network architectures.

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pdf link (url) [BibTex]

pdf link (url) [BibTex]


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Blind Retrospective Motion Correction of MR Images

Loktyushin, A.

University of Tübingen, Germany, May 2015 (phdthesis)

ei

[BibTex]

[BibTex]


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A theoretical study of potentially observable chirality-sensitive NMR effects in molecules

Garbacz, P., Cukras, J., Jaszunski, M.

Phys. Chem. Chem. Phys., 17(35):22642-22651, May 2015 (article)

Abstract
Two recently predicted nuclear magnetic resonance effects, the chirality-induced rotating electric polarization and the oscillating magnetization, are examined for several experimentally available chiral molecules. We discuss in detail the requirements for experimental detection of chirality-sensitive NMR effects of the studied molecules. These requirements are related to two parameters: the shielding polarizability and the antisymmetric part of the nuclear magnetic shielding tensor. The dominant second contribution has been computed for small molecules at the coupled cluster and density functional theory levels. It was found that DFT calculations using the KT2 functional and the aug-cc-pCVTZ basis set adequately reproduce the CCSD(T) values obtained with the same basis set. The largest values of parameters, thus most promising from the experimental point of view, were obtained for the fluorine nuclei in 1,3-difluorocyclopropene and 1,3-diphenyl-2-fluoro-3-trifluoromethylcyclopropene.

pf

DOI [BibTex]

DOI [BibTex]


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Event-based Estimation and Control for Remote Robot Operation with Reduced Communication

Trimpe, S., Buchli, J.

In Proceedings of the IEEE International Conference on Robotics and Automation, May 2015 (inproceedings)

Abstract
An event-based communication framework for remote operation of a robot via a bandwidth-limited network is proposed. The robot sends state and environment estimation data to the operator, and the operator transmits updated control commands or policies to the robot. Event-based communication protocols are designed to ensure that data is transmitted only when required: the robot sends new estimation data only if this yields a significant information gain at the operator, and the operator transmits an updated control policy only if this comes with a significant improvement in control performance. The developed framework is modular and can be used with any standard estimation and control algorithms. Simulation results of a robotic arm highlight its potential for an efficient use of limited communication resources, for example, in disaster response scenarios such as the DARPA Robotics Challenge.

am ics

PDF DOI Project Page [BibTex]

PDF DOI Project Page [BibTex]


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Lernende Roboter

Trimpe, S.

In Jahrbuch der Max-Planck-Gesellschaft, Max Planck Society, May 2015, (popular science article in German) (inbook)

am ics

link (url) [BibTex]

link (url) [BibTex]


Thumb xl af4e540bee9e66bef88de83541787fe62fb3803ca149aa6a76018772ebe5b95f
Dynamic Inclusion Complexes of Metal Nanoparticles Inside Nanocups

Alarcon-Correa, M., Lee, T. C., Fischer, P.

Angew. Chem. Int. Ed., 54(23):6730-6734, May 2015, Featured cover article. (article)

Abstract
Host-guest inclusion complexes are abundant in molecular systems and of fundamental importance in living organisms. Realizing a colloidal analogue of a molecular dynamic inclusion complex is challenging because inorganic nanoparticles (NPs) with a well-defined cavity and portal are difficult to synthesize in high yield and with good structural fidelity. Herein, a generic strategy towards the fabrication of dynamic 1: 1 inclusion complexes of metal nanoparticles inside oxide nanocups with high yield (> 70%) and regiospecificity (> 90%) by means of a reactive double Janus nanoparticle intermediate is reported. Experimental evidence confirms that the inclusion complexes are formed by a kinetically controlled mechanism involving a delicate interplay between bipolar galvanic corrosion and alloying-dealloying oxidation. Release of the NP guest from the nanocups can be efficiently triggered by an external stimulus. Featured cover article.

pf

DOI [BibTex]

DOI [BibTex]


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Independence of cause and mechanism in brain networks

Besserve, M.

DALI workshop on Networks: Processes and Causality, April 2015 (talk)

ei

[BibTex]

[BibTex]