In Proceedings of the Twenty-Ninth Conference Annual Conference on Uncertainty in Artificial Intelligence, pages: 440-448, (Editors: A Nicholson and P Smyth), AUAI Press, Corvallis, Oregon, UAI, 2013 (inproceedings)
Artificial Intelligence, 182-183, pages: 1-31, May 2012 (article)
While conventional approaches to causal inference are mainly based on conditional (in)dependences, recent methods also account for the shape of (conditional) distributions. The idea is that the causal hypothesis “X causes Y” imposes that the marginal distribution PX and the conditional distribution PY|X represent independent mechanisms of nature. Recently it has been postulated that the shortest description of the joint distribution PX,Y should therefore be given by separate descriptions of PX and PY|X. Since description length in the sense of Kolmogorov complexity is uncomputable, practical implementations rely on other notions of independence. Here we define independence via orthogonality in information space. This way, we can explicitly describe the kind of dependence that occurs between PY and PX|Y making the causal hypothesis “Y causes X” implausible. Remarkably, this asymmetry between cause and effect becomes particularly simple if X and Y are deterministically related. We present an inference method that works in this case. We also discuss some theoretical results for the non-deterministic case although it is not clear how to employ them for a more general inference method.
In pages: 589-598, (Editors: FG Cozman and A Pfeffer), AUAI Press, Corvallis, OR, USA, 27th Conference on Uncertainty in Artificial Intelligence (UAI), July 2011 (inproceedings)
This work addresses the following question: Under what assumptions on the data generating process can one infer the causal graph from the joint distribution? The approach
taken by conditional independencebased causal discovery methods is based on two assumptions: the Markov condition and faithfulness. It has been shown that under these assumptions the causal graph can be identified up to Markov equivalence (some arrows remain undirected) using methods like the PC algorithm. In this work we propose an alternative by Identifiable Functional Model Classes (IFMOCs). As our main theorem we prove that if the data generating process belongs to an IFMOC, one can identify the complete causal graph. To the best of our knowledge this is the first identifiability result of this kind that is not limited to linear functional relationships. We discuss
how the IFMOC assumption and the Markov and faithfulness assumptions relate to each other and explain why we believe that the IFMOC assumption can be tested more easily on given data. We further provide a practical algorithm that recovers the causal graph from finitely many data; experiments on simulated data support the theoretical fndings.
In Advances in Neural Information Processing Systems 24, pages: 630-638, (Editors: J Shawe-Taylor and RS Zemel and P Bartlett and F Pereira and KQ Weinberger), Twenty-Fifth Annual Conference on Neural Information Processing Systems (NIPS), 2011 (inproceedings)
Inference in matrix-variate Gaussian models has major applications for multioutput prediction and joint learning of row and column covariances from matrixvariate data. Here, we discuss an approach for efficient inference in such models that explicitly account for iid observation noise. Computational tractability can be retained by exploiting the Kronecker product between row and column covariance matrices. Using this framework, we show how to generalize the Graphical Lasso in order to learn a sparse inverse covariance between features while accounting for
a low-rank confounding covariance between samples. We show practical utility on applications to biology, where we model covariances with more than 100,000 dimensions.
We find greater accuracy in recovering biological network structures and are able to better reconstruct the confounders.
In Advances in Neural Information Processing Systems 24, pages: 639-647, (Editors: J Shawe-Taylor and RS Zemel and PL Bartlett and FCN Pereira and KQ Weinberger), Curran Associates, Inc., Red Hook, NY, USA, Twenty-Fifth Annual Conference on Neural Information Processing Systems (NIPS), 2011 (inproceedings)
We study a particular class of cyclic causal models, where each variable is a (possibly nonlinear) function of its parents and additive noise. We prove that the causal
graph of such models is generically identifiable in the bivariate, Gaussian-noise case. We also propose a method to learn such models from observational data. In the acyclic case, the method reduces to ordinary regression, but in the more challenging cyclic case, an additional term arises in the loss function, which makes it a special case of nonlinear independent component analysis. We illustrate the proposed method on synthetic data.
In Proceedings of the 26th Conference on Uncertainty in Artificial Intelligence, pages: 143-150, (Editors: P Grünwald and P Spirtes), AUAI Press, Corvallis, OR, USA, UAI, July 2010 (inproceedings)
We consider two variables that are related to each other by an invertible function. While it has previously been shown that the dependence structure of the noise can provide hints
to determine which of the two variables is the cause, we presently show that even in the deterministic (noise-free) case, there are asymmetries that can be exploited for causal inference. Our method is based on the idea that if the function and the probability density of the cause are chosen independently, then the distribution of the effect will, in a certain sense, depend on the function. We
provide a theoretical analysis of this method, showing that it also works in the low noise regime, and link it to information geometry. We report strong empirical results on various real-world data sets from different domains.
In JMLR Workshop and Conference Proceedings: Volume 6, pages: 147-156, (Editors: Guyon, I. , D. Janzing, B. Schölkopf), MIT Press, Cambridge, MA, USA, Causality: Objectives and Assessment (NIPS Workshop) , 2010 (inproceedings)
We describe eight data sets that together formed the CauseEffectPairs task in the Causality Challenge #2: Pot-Luck competition. Each set consists of a sample of a pair of statistically dependent random variables. One variable is known to cause the other one, but this information was hidden from the participants; the task was to identify which of the two variables was the cause and which one the effect, based upon the observed sample. The data sets were chosen such that we expect common agreement on the ground truth. Even though part of the statistical dependences may also be due to hidden common causes, common sense tells us that there is a significant cause-effect relation between the two variables in each pair. We also present baseline results using three different causal inference methods.
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