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2015


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Linking Objects to Actions: Encoding of Target Object and Grasping Strategy in Primate Ventral Premotor Cortex

Vargas-Irwin, C. E., Franquemont, L., Black, M. J., Donoghue, J. P.

Journal of Neuroscience, 35(30):10888-10897, July 2015 (article)

Abstract
Neural activity in ventral premotor cortex (PMv) has been associated with the process of matching perceived objects with the motor commands needed to grasp them. It remains unclear how PMv networks can flexibly link percepts of objects affording multiple grasp options into a final desired hand action. Here, we use a relational encoding approach to track the functional state of PMv neuronal ensembles in macaque monkeys through the process of passive viewing, grip planning, and grasping movement execution. We used objects affording multiple possible grip strategies. The task included separate instructed delay periods for object presentation and grip instruction. This approach allowed us to distinguish responses elicited by the visual presentation of the objects from those associated with selecting a given motor plan for grasping. We show that PMv continuously incorporates information related to object shape and grip strategy as it becomes available, revealing a transition from a set of ensemble states initially most closely related to objects, to a new set of ensemble patterns reflecting unique object-grip combinations. These results suggest that PMv dynamically combines percepts, gradually navigating toward activity patterns associated with specific volitional actions, rather than directly mapping perceptual object properties onto categorical grip representations. Our results support the idea that PMv is part of a network that dynamically computes motor plans from perceptual information. Significance Statement: The present work demonstrates that the activity of groups of neurons in primate ventral premotor cortex reflects information related to visually presented objects, as well as the motor strategy used to grasp them, linking individual objects to multiple possible grips. PMv could provide useful control signals for neuroprosthetic assistive devices designed to interact with objects in a flexible way.

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publisher link DOI Project Page [BibTex]

2015


publisher link DOI Project Page [BibTex]


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pH-taxis of biohybrid microsystems

Zhuang, J., Carlsen, R. W., Sitti, M.

Scientific reports, 5, Nature Publishing Group, June 2015 (article)

Abstract
The last decade has seen an increasing number of studies developing bacteria and other cell-integrated biohybrid microsystems. However, the highly stochastic motion of these microsystems severely limits their potential use. Here, we present a method that exploits the pH sensing of flagellated bacteria to realize robust drift control of multi-bacteria propelled microrobots. Under three specifically configured pH gradients, we demonstrate that the microrobots exhibit both unidirectional and bidirectional pH-tactic behaviors, which are also observed in free-swimming bacteria. From trajectory analysis, we find that the swimming direction and speed biases are two major factors that contribute to their tactic drift motion. The motion analysis of microrobots also sheds light on the propulsion dynamics of the flagellated bacteria as bioactuators. It is expected that similar driving mechanisms are shared among pH-taxis, chemotaxis, and thermotaxis. By identifying the mechanism that drives the tactic behavior of bacteria-propelled microsystems, this study opens up an avenue towards improving the control of biohybrid microsystems. Furthermore, assuming that it is possible to tune the preferred pH of bioactuators by genetic engineering, these biohybrid microsystems could potentially be applied to sense the pH gradient induced by cancerous cells in stagnant fluids inside human body and realize targeted drug delivery.

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DOI Project Page [BibTex]

DOI Project Page [BibTex]


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Kernel methods in medical imaging

Charpiat, G., Hofmann, M., Schölkopf, B.

In Handbook of Biomedical Imaging, pages: 63-81, 4, (Editors: Paragios, N., Duncan, J. and Ayache, N.), Springer, Berlin, Germany, June 2015 (inbook)

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Web link (url) [BibTex]

Web link (url) [BibTex]


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Guaranteed H2 Performance in Distributed Event-Based State Estimation

Muehlebach, M., Trimpe, S.

In Proceeding of the First International Conference on Event-based Control, Communication, and Signal Processing, June 2015 (inproceedings)

am ics

PDF DOI Project Page [BibTex]

PDF DOI Project Page [BibTex]


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The Stitched Puppet: A Graphical Model of 3D Human Shape and Pose

Zuffi, S., Black, M. J.

In IEEE Conf. on Computer Vision and Pattern Recognition (CVPR 2015), pages: 3537-3546, June 2015 (inproceedings)

Abstract
We propose a new 3D model of the human body that is both realistic and part-based. The body is represented by a graphical model in which nodes of the graph correspond to body parts that can independently translate and rotate in 3D as well as deform to capture pose-dependent shape variations. Pairwise potentials define a “stitching cost” for pulling the limbs apart, giving rise to the stitched puppet model (SPM). Unlike existing realistic 3D body models, the distributed representation facilitates inference by allowing the model to more effectively explore the space of poses, much like existing 2D pictorial structures models. We infer pose and body shape using a form of particle-based max-product belief propagation. This gives the SPM the realism of recent 3D body models with the computational advantages of part-based models. We apply the SPM to two challenging problems involving estimating human shape and pose from 3D data. The first is the FAUST mesh alignment challenge (http://faust.is.tue.mpg.de/), where ours is the first method to successfully align all 3D meshes. The second involves estimating pose and shape from crude visual hull representations of complex body movements.

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pdf Extended Abstract poster code/project video DOI Project Page [BibTex]

pdf Extended Abstract poster code/project video DOI Project Page [BibTex]


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On the Choice of the Event Trigger in Event-based Estimation

Trimpe, S., Campi, M.

In Proceeding of the First International Conference on Event-based Control, Communication, and Signal Processing, June 2015 (inproceedings)

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PDF DOI Project Page [BibTex]

PDF DOI Project Page [BibTex]


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Retrospective rigid motion correction of undersampled MRI data

Loktyushin, A., Babayeva, M., Gallichan, D., Krueger, G., Scheffler, K., Kober, T.

23rd Annual Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine, ISMRM, June 2015 (poster)

ei

[BibTex]

[BibTex]


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Displets: Resolving Stereo Ambiguities using Object Knowledge

Güney, F., Geiger, A.

In IEEE Conf. on Computer Vision and Pattern Recognition (CVPR) 2015, pages: 4165-4175, IEEE International Conference on Computer Vision and Pattern Recognition (CVPR), June 2015 (inproceedings)

Abstract
Stereo techniques have witnessed tremendous progress over the last decades, yet some aspects of the problem still remain challenging today. Striking examples are reflecting and textureless surfaces which cannot easily be recovered using traditional local regularizers. In this paper, we therefore propose to regularize over larger distances using object-category specific disparity proposals (displets) which we sample using inverse graphics techniques based on a sparse disparity estimate and a semantic segmentation of the image. The proposed displets encode the fact that objects of certain categories are not arbitrarily shaped but typically exhibit regular structures. We integrate them as non-local regularizer for the challenging object class 'car' into a superpixel based CRF framework and demonstrate its benefits on the KITTI stereo evaluation.

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pdf abstract suppmat [BibTex]

pdf abstract suppmat [BibTex]


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Improving Quantitative Susceptibility and R2* Mapping by Applying Retrospective Motion Correction

Feng, X., Loktyushin, A., Deistung, A., Reichenbach, J. R.

23rd Annual Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine, ISMRM, June 2015 (poster)

ei

[BibTex]

[BibTex]


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Object Scene Flow for Autonomous Vehicles

Menze, M., Geiger, A.

In IEEE Conf. on Computer Vision and Pattern Recognition (CVPR) 2015, pages: 3061-3070, IEEE, IEEE International Conference on Computer Vision and Pattern Recognition (CVPR), June 2015 (inproceedings)

Abstract
This paper proposes a novel model and dataset for 3D scene flow estimation with an application to autonomous driving. Taking advantage of the fact that outdoor scenes often decompose into a small number of independently moving objects, we represent each element in the scene by its rigid motion parameters and each superpixel by a 3D plane as well as an index to the corresponding object. This minimal representation increases robustness and leads to a discrete-continuous CRF where the data term decomposes into pairwise potentials between superpixels and objects. Moreover, our model intrinsically segments the scene into its constituting dynamic components. We demonstrate the performance of our model on existing benchmarks as well as a novel realistic dataset with scene flow ground truth. We obtain this dataset by annotating 400 dynamic scenes from the KITTI raw data collection using detailed 3D CAD models for all vehicles in motion. Our experiments also reveal novel challenges which can't be handled by existing methods.

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pdf abstract suppmat DOI [BibTex]

pdf abstract suppmat DOI [BibTex]


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Pose-Conditioned Joint Angle Limits for 3D Human Pose Reconstruction

Akhter, I., Black, M. J.

In IEEE Conf. on Computer Vision and Pattern Recognition (CVPR 2015), pages: 1446-1455, June 2015 (inproceedings)

Abstract
The estimation of 3D human pose from 2D joint locations is central to many vision problems involving the analysis of people in images and video. To address the fact that the problem is inherently ill posed, many methods impose a prior over human poses. Unfortunately these priors admit invalid poses because they do not model how joint-limits vary with pose. Here we make two key contributions. First, we collected a motion capture dataset that explores a wide range of human poses. From this we learn a pose-dependent model of joint limits that forms our prior. The dataset and the prior will be made publicly available. Second, we define a general parameterization of body pose and a new, multistage, method to estimate 3D pose from 2D joint locations that uses an over-complete dictionary of human poses. Our method shows good generalization while avoiding impossible poses. We quantitatively compare our method with recent work and show state-of-the-art results on 2D to 3D pose estimation using the CMU mocap dataset. We also show superior results on manual annotations on real images and automatic part-based detections on the Leeds sports pose dataset.

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pdf Extended Abstract video project/data/code poster DOI Project Page Project Page [BibTex]

pdf Extended Abstract video project/data/code poster DOI Project Page Project Page [BibTex]


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Optimal Length of Low Reynolds Number Nanopropellers

Walker (Schamel), D., Kuebler, M., Morozov, K. I., Fischer, P., Leshansky, A. M.

Nano Letters, 15(7):4412-4416, June 2015 (article)

Abstract
Locomotion in fluids at the nanoscale is dominated by viscous drag. One efficient propulsion scheme is to use a weak rotating magnetic field that drives a chiral object. Froth bacterial flagella to artificial drills, the corkscrew is a universally useful chiral shape for propulsion in viscous environments. Externally powered magnetic micro- and nanomotors have been recently developed that allow for precise fuel-free propulsion in complex media. Here, we combine analytical and numerical theory with experiments on nanostructured screw-propellers to show that the optimal length is surprisingly short only about one helical turn, which is shorter than most of the structures in use to date. The results have important implications for the design of artificial actuated nano- and micropropellers and can dramatically reduce fabrication times, while ensuring optimal performance.

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DOI [BibTex]

DOI [BibTex]


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Efficient Sparse-to-Dense Optical Flow Estimation using a Learned Basis and Layers

Wulff, J., Black, M. J.

In IEEE Conf. on Computer Vision and Pattern Recognition (CVPR 2015), pages: 120-130, June 2015 (inproceedings)

Abstract
We address the elusive goal of estimating optical flow both accurately and efficiently by adopting a sparse-to-dense approach. Given a set of sparse matches, we regress to dense optical flow using a learned set of full-frame basis flow fields. We learn the principal components of natural flow fields using flow computed from four Hollywood movies. Optical flow fields are then compactly approximated as a weighted sum of the basis flow fields. Our new PCA-Flow algorithm robustly estimates these weights from sparse feature matches. The method runs in under 300ms/frame on the MPI-Sintel dataset using a single CPU and is more accurate and significantly faster than popular methods such as LDOF and Classic+NL. The results, however, are too smooth for some applications. Consequently, we develop a novel sparse layered flow method in which each layer is represented by PCA-flow. Unlike existing layered methods, estimation is fast because it uses only sparse matches. We combine information from different layers into a dense flow field using an image-aware MRF. The resulting PCA-Layers method runs in 3.6s/frame, is significantly more accurate than PCA-flow and achieves state-of-the-art performance in occluded regions on MPI-Sintel.

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pdf Extended Abstract Supplemental Material Poster Code Project Page Project Page [BibTex]


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Permutohedral Lattice CNNs

Kiefel, M., Jampani, V., Gehler, P. V.

In ICLR Workshop Track, ICLR, May 2015 (inproceedings)

Abstract
This paper presents a convolutional layer that is able to process sparse input features. As an example, for image recognition problems this allows an efficient filtering of signals that do not lie on a dense grid (like pixel position), but of more general features (such as color values). The presented algorithm makes use of the permutohedral lattice data structure. The permutohedral lattice was introduced to efficiently implement a bilateral filter, a commonly used image processing operation. Its use allows for a generalization of the convolution type found in current (spatial) convolutional network architectures.

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pdf link (url) [BibTex]

pdf link (url) [BibTex]


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Object Detection Using Deep Learning - Learning where to search using visual attention

Kloss, A.

Eberhard Karls Universität Tübingen, May 2015 (mastersthesis)

Abstract
Detecting and identifying the different objects in an image fast and reliably is an important skill for interacting with one’s environment. The main problem is that in theory, all parts of an image have to be searched for objects on many different scales to make sure that no object instance is missed. It however takes considerable time and effort to actually classify the content of a given image region and both time and computational capacities that an agent can spend on classification are limited. Humans use a process called visual attention to quickly decide which locations of an image need to be processed in detail and which can be ignored. This allows us to deal with the huge amount of visual information and to employ the capacities of our visual system efficiently. For computer vision, researchers have to deal with exactly the same problems, so learning from the behaviour of humans provides a promising way to improve existing algorithms. In the presented master’s thesis, a model is trained with eye tracking data recorded from 15 participants that were asked to search images for objects from three different categories. It uses a deep convolutional neural network to extract features from the input image that are then combined to form a saliency map. This map provides information about which image regions are interesting when searching for the given target object and can thus be used to reduce the parts of the image that have to be processed in detail. The method is based on a recent publication of Kümmerer et al., but in contrast to the original method that computes general, task independent saliency, the presented model is supposed to respond differently when searching for different target categories.

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PDF Project Page [BibTex]


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Fiberbot: A miniature crawling robot using a directional fibrillar pad

Han, Y., Marvi, H., Sitti, M.

In Robotics and Automation (ICRA), 2015 IEEE International Conference on, pages: 3122-3127, May 2015 (inproceedings)

Abstract
Vibration-driven locomotion has been widely used for crawling robot studies. Such robots usually have a vibration motor as the actuator and a fibrillar structure for providing directional friction on the substrate. However, there has not been any studies about the effect of fiber structure on robot crawling performance. In this paper, we develop Fiberbot, a custom made mini vibration robot, for studying the effect of fiber angle on robot velocity, steering, and climbing performance. It is known that the friction force with and against fibers depends on the fiber angle. Thus, we first present a new fabrication method for making millimeter scale fibers at a wide range of angles. We then show that using 30° angle fibers that have the highest friction anisotropy (ratio of backward to forward friction force) among the other fibers we fabricated in this study, Fiberbot speed on glass increases to 13.8±0.4 cm/s (compared to ν = 0.6±0.1 cm/s using vertical fibers). We also demonstrate that the locomotion direction of Fiberbot depends on the tilting direction of fibers and we can steer the robot by rotating the fiber pad. Fiberbot could also climb on glass at inclinations of up to 10° when equipped with fibers of high friction anisotropy. We show that adding a rigid tail to the robot it can climb on glass at 25° inclines. Moreover, the robot is able to crawl on rough surfaces such as wood (ν = 10.0±0.2 cm/s using 30° fiber pad). Fiberbot, a low-cost vibration robot equipped with a custom-designed fiber pad with steering and climbing capabilities could be used for studies on collective behavior on a wide range of topographies as well as search and exploratory missions.

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DOI [BibTex]

DOI [BibTex]


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Platform design and tethered flight of a motor-driven flapping-wing system

Hines, L., Colmenares, D., Sitti, M.

In Robotics and Automation (ICRA), 2015 IEEE International Conference on, pages: 5838-5845, May 2015 (inproceedings)

Abstract
In this work, we examine two design modifications to a tethered motor-driven flapping-wing system. Previously, we had demonstrated a simple mechanism utilizing a linear transmission for resonant operation and direct drive of the wing flapping angle for control. The initial two-wing system had a weight of 2.7 grams and a maximum lift-to-weight ratio of 1.4. While capable of vertical takeoff, in open-loop flight it demonstrated instability and pitch oscillations at the wing flapping frequency, leading to flight times of only a few wing strokes. Here the effect of vertical wing offset as well as an alternative multi-wing layout is investigated and experimentally tested with newly constructed prototypes. With only a change in vertical wing offset, stable open-loop flight of the two-wing flapping system is shown to be theoretically possible, but difficult to achieve with our current design and operating parameters. Both of the new two and four-wing systems, however, prove capable of flying to the end of the tether, with the four-wing system prototype eliminating disruptive wing beat oscillations.

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DOI [BibTex]

DOI [BibTex]


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Structural optimization for flexure-based parallel mechanisms–Towards achieving optimal dynamic and stiffness properties

Lum, G. Z., Teo, T. J., Yeo, S. H., Yang, G., Sitti, M.

Precision Engineering, 42, pages: 195-207, Elsevier, May 2015 (article)

Abstract
Flexure-based parallel mechanisms (FPMs) are a type of compliant mechanisms that consist of a rigid end-effector that is articulated by several parallel, flexible limbs (a.k.a. sub-chains). Existing design methods can enhance the FPMs’ dynamic and stiffness properties by conducting a size optimization on their sub-chains. A similar optimization process, however, was not performed for their sub-chains’ topology, and this may severely limit the benefits of a size optimization. Thus, this paper proposes to use a structural optimization approach to synthesize and optimize the topology, shape and size of the FPMs’ sub-chains. The benefits of this approach are demonstrated via the design and development of a planar X − Y − θz FPM. A prototype of this FPM was evaluated experimentally to have a large workspace of 1.2 mm × 1.2 mm × 6°, a fundamental natural frequency of 102 Hz, and stiffness ratios that are greater than 120. The achieved properties show significant improvement over existing 3-degrees-of-freedom compliant mechanisms that can deflect more than 0.5 mm and 0.5°. These compliant mechanisms typically have stiffness ratios that are less than 60 and a fundamental natural frequency that is less than 45 Hz.

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DOI [BibTex]

DOI [BibTex]


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Blind Retrospective Motion Correction of MR Images

Loktyushin, A.

University of Tübingen, Germany, May 2015 (phdthesis)

ei

[BibTex]

[BibTex]


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Leveraging Big Data for Grasp Planning

Kappler, D., Bohg, B., Schaal, S.

In Proceedings of the IEEE International Conference on Robotics and Automation, May 2015 (inproceedings)

Abstract
We propose a new large-scale database containing grasps that are applied to a large set of objects from numerous categories. These grasps are generated in simulation and are annotated with different grasp stability metrics. We use a descriptive and efficient representation of the local object shape at which each grasp is applied. Given this data, we present a two-fold analysis: (i) We use crowdsourcing to analyze the correlation of the metrics with grasp success as predicted by humans. The results show that the metric based on physics simulation is a more consistent predictor for grasp success than the standard ε-metric. The results also support the hypothesis that human labels are not required for good ground truth grasp data. Instead the physics-metric can be used to generate datasets in simulation that may then be used to bootstrap learning in the real world. (ii) We apply a deep learning method and show that it can better leverage the large-scale database for prediction of grasp success compared to logistic regression. Furthermore, the results suggest that labels based on the physics-metric are less noisy than those from the ε-metric and therefore lead to a better classification performance.

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PDF data DOI Project Page [BibTex]

PDF data DOI Project Page [BibTex]


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Robot Arm Tracking with Random Decision Forests

Widmaier, F.

Eberhard-Karls-Universität Tübingen, May 2015 (mastersthesis)

Abstract
For grasping and manipulation with robot arms, knowing the current pose of the arm is crucial for successful controlling its motion. Often, pose estimations can be acquired from encoders inside the arm, but they can have significant inaccuracy which makes the use of additional techniques necessary. In this master thesis, a novel approach of robot arm pose estimation is presented, that works on single depth images without the need of prior foreground segmentation or other preprocessing steps. A random regression forest is used, which is trained only on synthetically generated data. The approach improves former work by Bohg et al. by considerably reducing the computational effort both at training and test time. The forest in the new method directly estimates the desired joint angles while in the former approach, the forest casts 3D position votes for the joints, which then have to be clustered and fed into an iterative inverse kinematic process to finally get the joint angles. To improve the estimation accuracy, the standard training objective of the forest training is replaced by a specialized function that makes use of a model-dependent distance metric, called DISP. Experimental results show that the specialized objective indeed improves pose estimation and it is shown that the method, despite of being trained on synthetic data only, is able to provide reasonable estimations for real data at test time.

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PDF Project Page [BibTex]

PDF Project Page [BibTex]


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A theoretical study of potentially observable chirality-sensitive NMR effects in molecules

Garbacz, P., Cukras, J., Jaszunski, M.

Phys. Chem. Chem. Phys., 17(35):22642-22651, May 2015 (article)

Abstract
Two recently predicted nuclear magnetic resonance effects, the chirality-induced rotating electric polarization and the oscillating magnetization, are examined for several experimentally available chiral molecules. We discuss in detail the requirements for experimental detection of chirality-sensitive NMR effects of the studied molecules. These requirements are related to two parameters: the shielding polarizability and the antisymmetric part of the nuclear magnetic shielding tensor. The dominant second contribution has been computed for small molecules at the coupled cluster and density functional theory levels. It was found that DFT calculations using the KT2 functional and the aug-cc-pCVTZ basis set adequately reproduce the CCSD(T) values obtained with the same basis set. The largest values of parameters, thus most promising from the experimental point of view, were obtained for the fluorine nuclei in 1,3-difluorocyclopropene and 1,3-diphenyl-2-fluoro-3-trifluoromethylcyclopropene.

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DOI [BibTex]

DOI [BibTex]


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Consensus Message Passing for Layered Graphical Models

Jampani, V., Eslami, S. M. A., Tarlow, D., Kohli, P., Winn, J.

In Eighteenth International Conference on Artificial Intelligence and Statistics (AISTATS), 38, pages: 425-433, JMLR Workshop and Conference Proceedings, Eighteenth International Conference on Artificial Intelligence and Statistics, May 2015 (inproceedings)

Abstract
Generative models provide a powerful framework for probabilistic reasoning. However, in many domains their use has been hampered by the practical difficulties of inference. This is particularly the case in computer vision, where models of the imaging process tend to be large, loopy and layered. For this reason bottom-up conditional models have traditionally dominated in such domains. We find that widely-used, general-purpose message passing inference algorithms such as Expectation Propagation (EP) and Variational Message Passing (VMP) fail on the simplest of vision models. With these models in mind, we introduce a modification to message passing that learns to exploit their layered structure by passing 'consensus' messages that guide inference towards good solutions. Experiments on a variety of problems show that the proposed technique leads to significantly more accurate inference results, not only when compared to standard EP and VMP, but also when compared to competitive bottom-up conditional models.

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online pdf supplementary link (url) [BibTex]

online pdf supplementary link (url) [BibTex]


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Event-based Estimation and Control for Remote Robot Operation with Reduced Communication

Trimpe, S., Buchli, J.

In Proceedings of the IEEE International Conference on Robotics and Automation, May 2015 (inproceedings)

Abstract
An event-based communication framework for remote operation of a robot via a bandwidth-limited network is proposed. The robot sends state and environment estimation data to the operator, and the operator transmits updated control commands or policies to the robot. Event-based communication protocols are designed to ensure that data is transmitted only when required: the robot sends new estimation data only if this yields a significant information gain at the operator, and the operator transmits an updated control policy only if this comes with a significant improvement in control performance. The developed framework is modular and can be used with any standard estimation and control algorithms. Simulation results of a robotic arm highlight its potential for an efficient use of limited communication resources, for example, in disaster response scenarios such as the DARPA Robotics Challenge.

am ics

PDF DOI Project Page [BibTex]

PDF DOI Project Page [BibTex]


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Lernende Roboter

Trimpe, S.

In Jahrbuch der Max-Planck-Gesellschaft, Max Planck Society, May 2015, (popular science article in German) (inbook)

am ics

link (url) [BibTex]

link (url) [BibTex]


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Dynamic Inclusion Complexes of Metal Nanoparticles Inside Nanocups

Alarcon-Correa, M., Lee, T. C., Fischer, P.

Angew. Chem. Int. Ed., 54(23):6730-6734, May 2015, Featured cover article. (article)

Abstract
Host-guest inclusion complexes are abundant in molecular systems and of fundamental importance in living organisms. Realizing a colloidal analogue of a molecular dynamic inclusion complex is challenging because inorganic nanoparticles (NPs) with a well-defined cavity and portal are difficult to synthesize in high yield and with good structural fidelity. Herein, a generic strategy towards the fabrication of dynamic 1: 1 inclusion complexes of metal nanoparticles inside oxide nanocups with high yield (> 70%) and regiospecificity (> 90%) by means of a reactive double Janus nanoparticle intermediate is reported. Experimental evidence confirms that the inclusion complexes are formed by a kinetically controlled mechanism involving a delicate interplay between bipolar galvanic corrosion and alloying-dealloying oxidation. Release of the NP guest from the nanocups can be efficiently triggered by an external stimulus. Featured cover article.

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DOI [BibTex]

DOI [BibTex]


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The Coordinate Particle Filter - A novel Particle Filter for High Dimensional Systems

Wüthrich, M., Bohg, J., Kappler, D., Pfreundt, C., Schaal, S.

In Proceedings of the IEEE International Conference on Robotics and Automation, May 2015 (inproceedings)

Abstract
Parametric filters, such as the Extended Kalman Filter and the Unscented Kalman Filter, typically scale well with the dimensionality of the problem, but they are known to fail if the posterior state distribution cannot be closely approximated by a density of the assumed parametric form. For nonparametric filters, such as the Particle Filter, the converse holds. Such methods are able to approximate any posterior, but the computational requirements scale exponentially with the number of dimensions of the state space. In this paper, we present the Coordinate Particle Filter which alleviates this problem. We propose to compute the particle weights recursively, dimension by dimension. This allows us to explore one dimension at a time, and resample after each dimension if necessary. Experimental results on simulated as well as real data con- firm that the proposed method has a substantial performance advantage over the Particle Filter in high-dimensional systems where not all dimensions are highly correlated. We demonstrate the benefits of the proposed method for the problem of multi-object and robotic manipulator tracking.

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arXiv Video Bayesian Filtering Framework Bayesian Object Tracking DOI Project Page [BibTex]


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Shape Models of the Human Body for Distributed Inference

Zuffi, S.

Brown University, May 2015 (phdthesis)

Abstract
In this thesis we address the problem of building shape models of the human body, in 2D and 3D, which are realistic and efficient to use. We focus our efforts on the human body, which is highly articulated and has interesting shape variations, but the approaches we present here can be applied to generic deformable and articulated objects. To address efficiency, we constrain our models to be part-based and have a tree-structured representation with pairwise relationships between connected parts. This allows the application of methods for distributed inference based on message passing. To address realism, we exploit recent advances in computer graphics that represent the human body with statistical shape models learned from 3D scans. We introduce two articulated body models, a 2D model, named Deformable Structures (DS), which is a contour-based model parameterized for 2D pose and projected shape, and a 3D model, named Stitchable Puppet (SP), which is a mesh-based model parameterized for 3D pose, pose-dependent deformations and intrinsic body shape. We have successfully applied the models to interesting and challenging problems in computer vision and computer graphics, namely pose estimation from static images, pose estimation from video sequences, pose and shape estimation from 3D scan data. This advances the state of the art in human pose and shape estimation and suggests that carefully de ned realistic models can be important for computer vision. More work at the intersection of vision and graphics is thus encouraged.

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PDF [BibTex]


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Autonomous Robots

Schaal, S.

In Jahrbuch der Max-Planck-Gesellschaft, May 2015 (incollection)

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[BibTex]

[BibTex]


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Controlled surface topography regulates collective 3D migration by epithelial–mesenchymal composite embryonic tissues

Song, J., Shawky, J. H., Kim, Y., Hazar, M., LeDuc, P. R., Sitti, M., Davidson, L. A.

Biomaterials, 58, pages: 1-9, Elsevier, April 2015 (article)

Abstract
Cells in tissues encounter a range of physical cues as they migrate. Probing single cell and collective migratory responses to physically defined three-dimensional (3D) microenvironments and the factors that modulate those responses are critical to understanding how tissue migration is regulated during development, regeneration, and cancer. One key physical factor that regulates cell migration is topography. Most studies on surface topography and cell mechanics have been carried out with single migratory cells, yet little is known about the spreading and motility response of 3D complex multi-cellular tissues to topographical cues. Here, we examine the response to complex topographical cues of microsurgically isolated tissue explants composed of epithelial and mesenchymal cell layers from naturally 3D organized embryos of the aquatic frog Xenopus laevis. We control topography using fabricated micropost arrays (MPAs) and investigate the collective 3D migration of these multi-cellular systems in these MPAs. We find that the topography regulates both collective and individual cell migration and that dense MPAs reduce but do not eliminate tissue spreading. By modulating cell size through the cell cycle inhibitor Mitomycin C or the spacing of the MPAs we uncover how 3D topographical cues disrupt collective cell migration. We find surface topography can direct both single cell motility and tissue spreading, altering tissue-scale processes that enable efficient conversion of single cell motility into collective movement.

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DOI [BibTex]

DOI [BibTex]


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Transfer Printing of Metallic Microstructures on Adhesion-Promoting Hydrogel Substrates

Wu, H., Sariola, V., Zhu, C., Zhao, J., Sitti, M., Bettinger, C. J.

Advanced Materials, 27(22):3398-3404, April 2015 (article)

Abstract
Fabrication schemes that integrate inorganic microstructures with hydrogel substrates are essential for advancing flexible electronics. A transfer printing process that is made possible through the design and synthesis of adhesion-promoting hydrogels as target substrates is reported. This fabrication technique may advance ultracompliant electronics by melding microfabricated structures with swollen hydrogel substrates.

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DOI [BibTex]

DOI [BibTex]


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Independence of cause and mechanism in brain networks

Besserve, M.

DALI workshop on Networks: Processes and Causality, April 2015 (talk)

ei

[BibTex]

[BibTex]


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Blind multirigid retrospective motion correction of MR images

Loktyushin, A., Nickisch, H., Pohmann, R., Schölkopf, B.

Magnetic Resonance in Medicine, 73(4):1457-1468, April 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Surface roughness-induced speed increase for active Janus micromotors

Choudhury, U., Soler, L., Gibbs, J. G., Sanchez, S., Fischer, P.

Chem. Comm., 51(41):8660-8663, April 2015 (article)

Abstract
We demonstrate a simple physical fabrication method to control surface roughness of Janus micromotors and fabricate self-propelled active Janus microparticles with rough catalytic platinum surfaces that show a four-fold increase in their propulsion speed compared to conventional Janus particles coated with a smooth Pt layer.

pf

DOI [BibTex]

DOI [BibTex]


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Dry adhesives and methods for making dry adhesives

Sitti, M., Murphy, M., Aksak, B.

March 2015, US Patent App. 14/625,162 (patent)

Abstract
Dry adhesives and methods for forming dry adhesives. A method of forming a dry adhesive structure on a substrate, comprises: forming a template backing layer of energy sensitive material on the substrate; forming a template layer of energy sensitive material on the template backing layer; exposing the template layer to a predetermined pattern of energy; removing a portion of the template layer related to the predetermined pattern of energy, and leaving a template structure formed from energy sensitive material and connected to the substrate via the template backing layer.

pi

[BibTex]

[BibTex]


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Biomedical applications of untethered mobile milli/microrobots

Sitti, M., Ceylan, H., Hu, W., Giltinan, J., Turan, M., Yim, S., Diller, E.

Proceedings of the IEEE, 103(2):205-224, IEEE, March 2015 (article)

Abstract
Untethered robots miniaturized to the length scale of millimeter and below attract growing attention for the prospect of transforming many aspects of health care and bioengineering. As the robot size goes down to the order of a single cell, previously inaccessible body sites would become available for high-resolution in situ and in vivo manipulations. This unprecedented direct access would enable an extensive range of minimally invasive medical operations. Here, we provide a comprehensive review of the current advances in biomedical untethered mobile milli/microrobots. We put a special emphasis on the potential impacts of biomedical microrobots in the near future. Finally, we discuss the existing challenges and emerging concepts associated with designing such a miniaturized robot for operation inside a biological environment for biomedical applications.

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DOI [BibTex]

DOI [BibTex]


Thumb xl screen shot 2015 10 14 at 08.57.57
Multi-view and 3D Deformable Part Models

Pepik, B., Stark, M., Gehler, P., Schiele, B.

Pattern Analysis and Machine Intelligence, 37(11):14, IEEE, March 2015 (article)

Abstract
As objects are inherently 3-dimensional, they have been modeled in 3D in the early days of computer vision. Due to the ambiguities arising from mapping 2D features to 3D models, 3D object representations have been neglected and 2D feature-based models are the predominant paradigm in object detection nowadays. While such models have achieved outstanding bounding box detection performance, they come with limited expressiveness, as they are clearly limited in their capability of reasoning about 3D shape or viewpoints. In this work, we bring the worlds of 3D and 2D object representations closer, by building an object detector which leverages the expressive power of 3D object representations while at the same time can be robustly matched to image evidence. To that end, we gradually extend the successful deformable part model [1] to include viewpoint information and part-level 3D geometry information, resulting in several different models with different level of expressiveness. We end up with a 3D object model, consisting of multiple object parts represented in 3D and a continuous appearance model. We experimentally verify that our models, while providing richer object hypotheses than the 2D object models, provide consistently better joint object localization and viewpoint estimation than the state-of-the-art multi-view and 3D object detectors on various benchmarks (KITTI [2], 3D object classes [3], Pascal3D+ [4], Pascal VOC 2007 [5], EPFL multi-view cars [6]).

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DOI Project Page [BibTex]

DOI Project Page [BibTex]


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From Scans to Models: Registration of 3D Human Shapes Exploiting Texture Information

Bogo, F.

University of Padova, March 2015 (phdthesis)

Abstract
New scanning technologies are increasing the importance of 3D mesh data, and of algorithms that can reliably register meshes obtained from multiple scans. Surface registration is important e.g. for building full 3D models from partial scans, identifying and tracking objects in a 3D scene, creating statistical shape models. Human body registration is particularly important for many applications, ranging from biomedicine and robotics to the production of movies and video games; but obtaining accurate and reliable registrations is challenging, given the articulated, non-rigidly deformable structure of the human body. In this thesis, we tackle the problem of 3D human body registration. We start by analyzing the current state of the art, and find that: a) most registration techniques rely only on geometric information, which is ambiguous on flat surface areas; b) there is a lack of adequate datasets and benchmarks in the field. We address both issues. Our contribution is threefold. First, we present a model-based registration technique for human meshes that combines geometry and surface texture information to provide highly accurate mesh-to-mesh correspondences. Our approach estimates scene lighting and surface albedo, and uses the albedo to construct a high-resolution textured 3D body model that is brought into registration with multi-camera image data using a robust matching term. Second, by leveraging our technique, we present FAUST (Fine Alignment Using Scan Texture), a novel dataset collecting 300 high-resolution scans of 10 people in a wide range of poses. FAUST is the first dataset providing both real scans and automatically computed, reliable "ground-truth" correspondences between them. Third, we explore possible uses of our approach in dermatology. By combining our registration technique with a melanocytic lesion segmentation algorithm, we propose a system that automatically detects new or evolving lesions over almost the entire body surface, thus helping dermatologists identify potential melanomas. We conclude this thesis investigating the benefits of using texture information to establish frame-to-frame correspondences in dynamic monocular sequences captured with consumer depth cameras. We outline a novel approach to reconstruct realistic body shape and appearance models from dynamic human performances, and show preliminary results on challenging sequences captured with a Kinect.

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[BibTex]


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Understanding the Geometry of Workspace Obstacles in Motion Optimization

Ratliff, N., Toussaint, M., Schaal, S.

In Proceedings of the IEEE International Conference on Robotics and Automation, March 2015 (inproceedings)

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PDF Video Project Page [BibTex]

PDF Video Project Page [BibTex]


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A quantum advantage for inferring causal structure

Ried, K., Agnew, M., Vermeyden, L., Janzing, D., Spekkens, R. W., Resch, K. J.

Nature Physics, 11(5):414-420, March 2015 (article)

Abstract
The problem of inferring causal relations from observed correlations is relevant to a wide variety of scientific disciplines. Yet given the correlations between just two classical variables, it is impossible to determine whether they arose from a causal influence of one on the other or a common cause influencing both. Only a randomized trial can settle the issue. Here we consider the problem of causal inference for quantum variables. We show that the analogue of a randomized trial, causal tomography, yields a complete solution. We also show that, in contrast to the classical case, one can sometimes infer the causal structure from observations alone. We implement a quantum-optical experiment wherein we control the causal relation between two optical modes, and two measurement schemes—with and without randomization—that extract this relation from the observed correlations. Our results show that entanglement and quantum coherence provide an advantage for causal inference.

ei

DOI [BibTex]

DOI [BibTex]


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Long Range Motion Estimation and Applications

Sevilla-Lara, L.

Long Range Motion Estimation and Applications, University of Massachusetts Amherst, University of Massachusetts Amherst, Febuary 2015 (phdthesis)

Abstract
Finding correspondences between images underlies many computer vision problems, such as optical flow, tracking, stereovision and alignment. Finding these correspondences involves formulating a matching function and optimizing it. This optimization process is often gradient descent, which avoids exhaustive search, but relies on the assumption of being in the basin of attraction of the right local minimum. This is often the case when the displacement is small, and current methods obtain very accurate results for small motions. However, when the motion is large and the matching function is bumpy this assumption is less likely to be true. One traditional way of avoiding this abruptness is to smooth the matching function spatially by blurring the images. As the displacement becomes larger, the amount of blur required to smooth the matching function becomes also larger. This averaging of pixels leads to a loss of detail in the image. Therefore, there is a trade-off between the size of the objects that can be tracked and the displacement that can be captured. In this thesis we address the basic problem of increasing the size of the basin of attraction in a matching function. We use an image descriptor called distribution fields (DFs). By blurring the images in DF space instead of in pixel space, we in- crease the size of the basin attraction with respect to traditional methods. We show competitive results using DFs both in object tracking and optical flow. Finally we demonstrate an application of capturing large motions for temporal video stitching.

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[BibTex]

[BibTex]


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Active colloidal microdrills

Gibbs, J. G., Fischer, P.

Chem. Comm., 51(20):4192-4195, Febuary 2015 (article)

Abstract
We demonstrate a chemically driven, autonomous catalytic microdrill. An asymmetric distribution of catalyst causes the helical swimmer to twist while it undergoes directed propulsion. A driving torque and hydrodynamic coupling between translation and rotation at low Reynolds number leads to drill-like swimming behaviour.

pf

DOI [BibTex]

DOI [BibTex]


Thumb xl publications toc
Collective 3D Migration of Embryonic Epithelial Mesenchymal Composite Tissues are Regulated by Surface Topology

Song, J., Shawky, J., Kim, Y. T., Hazar, M., Sitti, M., LeDuc, P. R., Davidson, L. A.

Biophysical Journal, 108(2):455a, Elsevier, January 2015 (article)

Abstract
Cells in tissues encounter a range of physical cues as they migrate. Probing single cell and collective migratory responses to physically defined three-dimensional (3D) microenvironments and the factors that modulate those responses are critical to understanding how tissue migration is regulated during development, regeneration, and cancer. One key physical factor that regulates cell migration is topology. Most studies on surface topology and cell mechanics have been carried out with single migratory cells, yet little is known about the spreading and motility response of 3D complex multicellular tissues to topological cues. Here, we examine the behaviors of microsurgically isolated tissue explants composed of epithelial and mesenchymal cell layers from naturally 3D organized embryos of the aquatic frog Xenopus laevis to complex topological cues. We control topology using fabricated micropost arrays (MPAs) with different diameters (e.g., different spacing gaps) and investigate the collective 3D migration of these multicellular systems in these MPAs. Our topographical controlled approach for cellular application enables us to achieve a high degree of control over micropost positioning and geometry via simple, accurate, and repeatable microfabrication processes. We find that the topology regulates both collective and individual cell migration and that dense MPAs reduce but do not eliminate tissue spreading. By modulating cell size through the cell cycle inhibitor Mitomycin C or the spacing within MPAs we discover a role for topology in disrupting collective enhancement of cell migration. We find 3D topological cues can direct both single cell motility and tissue spreading, altering tissue-scale processes that enable efficient conversion of single cell motility into collective movement.

pi

DOI [BibTex]

DOI [BibTex]


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Three-dimensional heterogeneous assembly of coded microgels using an untethered mobile microgripper

Chung, S. E., Dong, X., Sitti, M.

Lab on a Chip, 15(7):1667-1676, Royal Society of Chemistry, January 2015 (article)

Abstract
Three-dimensional (3D) heterogeneous assembly of coded microgels in enclosed aquatic environments is demonstrated using a remotely actuated and controlled magnetic microgripper by a customized electromagnetic coil system. The microgripper uses different ‘stick–slip’ and ‘rolling’ locomotion in 2D and also levitation in 3D by magnetic gradient-based pulling force. This enables the microrobot to precisely manipulate each microgel by controlling its position and orientation in all x–y–z directions. Our microrobotic assembly method broke the barrier of limitation on the number of assembled microgel layers, because it enabled precise 3D levitation of the microgripper. We used the gripper to assemble microgels that had been coded with different colours and shapes onto prefabricated polymeric microposts. This eliminates the need for extra secondary cross-linking to fix the final construct. We demonstrated assembly of microgels on a single micropost up to ten layers. By increasing the number and changing the distribution of the posts, complex heterogeneous microsystems were possible to construct in 3D.

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DOI Project Page [BibTex]

DOI Project Page [BibTex]


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Integrating mechanism synthesis and topological optimization technique for stiffness-oriented design of a three degrees-of-freedom flexure-based parallel mechanism

Lum, G. Z., Teo, T. J., Yang, G., Yeo, S. H., Sitti, M.

Precision Engineering, 39, pages: 125-133, Elsevier, January 2015 (article)

Abstract
This paper introduces a new design approach to synthesize multiple degrees-of-freedom (DOF) flexure-based parallel mechanism (FPM). Termed as an integrated design approach, it is a systematic design methodology, which integrates both classical mechanism synthesis and modern topology optimization technique, to deliver an optimized multi-DOF FPM. This design approach is separated into two levels. At sub-chain level, a novel topology optimization technique, which uses the classical linkage mechanisms as DNA seeds, is used to synthesize the compliant joints or limbs. At configuration level, the optimal compliant joints are used to form the parallel limbs of the multi-DOF FPM and another stage of optimization was conducted to determine the optimal space distribution between these compliant joints so as to generate a multi-DOF FPM with optimized stiffness characteristic. In this paper, the design of a 3-DOF planar motion FPM was used to demonstrate the effectiveness and accuracy of this proposed design approach.

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DOI [BibTex]


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Actively controlled fibrillar friction surfaces

Marvi, H, Han, Y, Sitti, M

Applied Physics Letters, 106(5):051602, AIP Publishing, January 2015 (article)

Abstract
In this letter, we propose a technique by which we can actively adjust frictional properties of elastic fibrillar structures in different directions. Using a mesh attached to a two degree-of-freedom linear stage, we controlled the active length and the tilt angle of fibers, independently. Thus, we were able to achieve desired levels of friction forces in different directions and significantly improve passive friction anisotropies observed in the same fiber arrays. The proposed technique would allow us to readily control the friction anisotropy and the friction magnitude of fibrillar structures in any planar direction.

pi

DOI [BibTex]

DOI [BibTex]


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Policy Search for Imitation Learning

Doerr, A.

University of Stuttgart, January 2015 (thesis)

am ics

link (url) Project Page [BibTex]

link (url) Project Page [BibTex]


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Spike train SIMilarity Space (SSIMS): A framework for single neuron and ensemble data analysis

Vargas-Irwin, C. E., Brandman, D. M., Zimmermann, J. B., Donoghue, J. P., Black, M. J.

Neural Computation, 27(1):1-31, MIT Press, January 2015 (article)

Abstract
We present a method to evaluate the relative similarity of neural spiking patterns by combining spike train distance metrics with dimensionality reduction. Spike train distance metrics provide an estimate of similarity between activity patterns at multiple temporal resolutions. Vectors of pair-wise distances are used to represent the intrinsic relationships between multiple activity patterns at the level of single units or neuronal ensembles. Dimensionality reduction is then used to project the data into concise representations suitable for clustering analysis as well as exploratory visualization. Algorithm performance and robustness are evaluated using multielectrode ensemble activity data recorded in behaving primates. We demonstrate how Spike train SIMilarity Space (SSIMS) analysis captures the relationship between goal directions for an 8-directional reaching task and successfully segregates grasp types in a 3D grasping task in the absence of kinematic information. The algorithm enables exploration of virtually any type of neural spiking (time series) data, providing similarity-based clustering of neural activity states with minimal assumptions about potential information encoding models.

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pdf: publisher site pdf: author's proof DOI Project Page [BibTex]

pdf: publisher site pdf: author's proof DOI Project Page [BibTex]


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Efficient Facade Segmentation using Auto-Context

Jampani, V., Gadde, R., Gehler, P. V.

In Applications of Computer Vision (WACV), 2015 IEEE Winter Conference on, pages: 1038-1045, IEEE, WACV,, January 2015 (inproceedings)

Abstract
In this paper we propose a system for the problem of facade segmentation. Building facades are highly structured images and consequently most methods that have been proposed for this problem, aim to make use of this strong prior information. We are describing a system that is almost domain independent and consists of standard segmentation methods. A sequence of boosted decision trees is stacked using auto-context features and learned using the stacked generalization technique. We find that this, albeit standard, technique performs better, or equals, all previous published empirical results on all available facade benchmark datasets. The proposed method is simple to implement, easy to extend, and very efficient at test time inference.

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website pdf supplementary IEEE page link (url) DOI Project Page [BibTex]

website pdf supplementary IEEE page link (url) DOI Project Page [BibTex]


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Positive definite matrices and the S-divergence

Sra, S.

Proceedings of the American Mathematical Society, 2015, Published electronically: October 22, 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]